imglob or imcp provided with FSL requires numpy.testing.decorators. However, numpy.testing.decorators has been deprecated from numpy 1.18. So, if you use numpy >=1.18, you see the following error:
ModuleNotFoundError: No module named 'numpy.testing.decorators'
Paul Mccarthy kindly suggested a workaround for this problem.
The below is his original message.
https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=FSL;a26a0779.2010
1. Move $FSLDIR/fslpython/envs/fslpython/bin/python3.7 to $FSLDIR/fslpython/envs/fslpython/bin/python3.7_bin
2. Replace $FSLDIR/fslpython/envs/fslpython/bin/python3.7 with a script containing this:#!/usr/bin/env bash thisdir=$(cd $(dirname $0) && pwd) $thisdir/python3.7_bin -I "$@"3. Change the permissions of the new $FSLDIR/fslpython/envs/fslpython/bin/python3.7 to make it executable
With this suggestion, I wrote a tiny script.
#!/bin/bash cd $FSLDIR/fslpython/envs/fslpython/bin/ sudo mv python3.7 python3.7_bin cat << 'EOF' | sudo tee python3.7 > /dev/null #!/usr/bin/env bash thisdir=$(cd $(dirname $0) && pwd) $thisdir/python3.7_bin -I "$@" EOF sudo chmod 755 python3.7
This script will make FSL use internal python within FSL.
