カテゴリ別アーカイブ： Lin4Neuro

I managed to customize Xubuntu 14.04LTS to be Lin4Neuro-14.04.

For this customization I did the following;

• .desktop files for neuroimaging analysis packages are stored in .local/share/applications
• Neuroimaging.directory is stored in .local/share/desktop-directories.
• Custom icons are stored in ~/.icons

If you look at these files, you will see how you can add your entries to menu.

I keep maintaining Xubuntu 12.04 because I am not certain Connectome mapper works in Xubuntu 14.04. If you want to use Connectome mapper, I recommend to use Lin4Neuro 12.04.

Lin4Neuro was updated. This time the change was limited to kernel update and security updates.

• Kernel was updated to 3.13.0-32-generic.
• All security updates were applied.

I’m working on Xubuntu 14.04, but it seems to have several problems with neuroimaging software packages. So for now I keep updating Lin4Neuro based on Xubuntu 12.04.

You can download the latest Lin4Neuro from here.

Lin4Neuro was updated. The changes of this version were as follows;

• Kernel was updated to 3.13.0-29-generic.
• ITK-SNAP was updated to 3.0.0.
• MITK was updated to 2014.03.00.
• MITK Diffusion was updated to 2014.03.
• All security updates were applied.

Lin4Neuro is still based on Xubuntu 12.04. Now I’m working on Xubuntu 14.04, so hopefully the next version will be based on Xubuntu 14.04.

You can download the latest Lin4Neuro from here.

I updated Lin4Neuro.
This time quite a few changes were made.

• Many unnecessary software packages and fonts were uninstalled.
• Connectome mapper was introduced. However, due to filesize and their licenses, freesurfer and Diffusion toolkit are not installed. I wrote a step-by-step guide how to install freesurfer and Diffusion toolkit on Lin4Neuro (the PDF file is found on the desktop), so afer you install these two software packages, you are ready to run Connectome mapper.
• Kernel was updated to 3.5.

You can download the latest Lin4Neuro from here.

Lin4Neuro was updated. Some changes are…

• Kernel was updated to 3.5.0-44-generic.
• FSL was updated to 5.0.6.
• Ginkgo CADx was updated to 3.6.0.
• MINC toolkit was updated to 1.0.01
• MITK was updated to 2013.12.00.
• Slicer was updated to 4.3.1.
• LibreOffice was updated to 4.1.4.2

You can download the latest Lin4Neuro from here.

Now I’m focusing on the 64bit version of Lin4Neuro, so I suspend updating 32bit version. One of the task is to make the UEFI-compatible L4N. I hope it will be possible to boot from UEFI on the next update.

Lin4Neuro was updated. I found wireless LAN doesn’t work properly, so I added compat wireless. With this you can use wireless LAN even with USB boot.

You can download the latest version of Lin4Neuro from here.

Lin4Neuro was updated. Some changes are…

• 3D Slicer was updated to 4.2.2-1 (only in 64bit version).
• MITK and MITK Diffusion was updated to 2012.12 version (only in 64bit version).
• nfs-common was added so that it can support NFS filesystem with default settings.

I also stopped developing Lin4Neuro based on Ubuntu 10.04LTS. I focus on developing Lin4Neuro based on Xubuntu 12.04LTS.

You can download latest Lin4Neuro from here.

これまで需要がありましたが、多忙にかまけてさぼっていたLin4Neuroの日本語版のページを作成いたしました。英語が苦手な方やとりあえず、何がどうなってるのと思う方々には多少お役に立てるのではないかと思います。
このブログの上の方にある「Lin4Neuro日本語版」をクリックしていただくか、
こちらからご覧ください。

I updated Lin4Neuro. The main changes of this version are the following.

• FSL was updated to 5.0.0.
• Slicer was updated to 4.1.1. (only in 64bit version)

Since FSLView doesn’t work well with Ubuntu 12.04, I stick to Ubuntu 10.04 for the time being.
However, I’m in the process of developing Lin4Neuro based on Ubuntu 12.04 (actually Xubuntu 12.04) now. Hopefully I will be able to release 12.04base version by the end of this year.

You can get the iso images from www.nemotos.net/l4n-iso