Change History

The following is a summary of the changes made to Lin4Neuro. The changes are listed with the most recent first. Note that Ubuntu system itself is always updated and it is not described below.

$HOME means the home directory of users.

07 May 2012
- lin4neuro-amd64-20120507 was released.
- lin4neuro-amd64-Ja-20120507 was released.
- lin4neuro-i386-20120507 was released.
- lin4neuro-i386-Ja-20120507 was released.
02 May 2012: r0020
- 23 Dec 2011
  - lin4neuro-amd64-20111221 was released.
  - lin4neuro-i386-20111223 was released.
  - lin4neuro-amd64-Ja-20111221 was released.
  - lin4neuro-i386-Ja-20111223 was released.
- 21 Dec 2011: r0019
  - It has been announced that Oracle (Sun) Java 6 is no longer available to be distributed by Ubuntu. It is recommended that users migrate to OpenJDK and/or Oracle Java 7. I decided to switch to OpenJDK. So Sun Java 6 was uninstalled from lin4neuro.
- 09 Sep 2011
  - lin4neuro-amd64-20110909 was released.
  - lin4neuro-i386-20110909 was released.
  - lin4neuro-amd64-Ja-20110909 was released.
  - lin4neuro-i386-Ja-20110909 was released.
- 08 Sep 2011: r0018
  - Aeskulap was added in both amd64 and i386 versions.
  - A sample script of N3 correction was modified.
  - Tiny scripts of image conversion (conversion to NIFTI or ANALYZE) were added.
- 01 Sep 2011: r0017
  - compat-wireless was added. Hopefully it will enable many machines to use WLAN.
- 29 Aug 2011: r0016
  - lin4neuro-amd64-Ja-20110829 was released.
- 28 Aug 2011: r0015
  - Japanese version of Lin4Neuro was released with a tiny bug.
- 26 Jun 2011
  - lin4neuro-amd64-20110625 was released.
  - lin4neuro-i386-20110625 was released.
- 26 Apr 2011
  - lin4neuro-amd64-20110625 was released.
  - lin4neuro-i386-20110625 was released.
- 25 Jun 2011: r0014
  - MRI Convert was updated to rev216. Now the location is set under /usr/bin.
  - All updates (security updates, kernel updates, and so on...) were done.
- 26 Apr 2011
  - lin4neuro-i386-20110426 was released.
  - lin4neuro-amd64-20110426 was released.
- 25 Apr 2011: r0013
  - 3D-slicer was updated to Slicer3-3.6.3-2011-03-04
  - Path for AFNI was added to .bashrc for CUI environment. (Thanks to Carolina Valencia for pointing out this.)
- 25 Feb 2011
  - lin4neuro-i386-20110225 was released.
- 25 Feb 2011: r0012
  - MRIConvert was added in i386 version. Though MRIConvert can be installed via NeuroDebian, revision is r190. Jolinda Smith releases r200. Therefore, I chose to add rev200. It is installed under /usr/local/MRIConvert.
- 12 Feb 2011
  - lin4neuro-amd64-20110212 and lin4neuro-i386-20110212 were released.
- 12 Feb 2011: r0011
  - Tutorials were updatd by Chris Rorden. Now a course slide of his class is included. You must check it!
  - MRIcroN was installed via NeuroDebian repository.
  - FSL was updated to 4.1.7 via NeuroDebian repository.
  - Linux-kernel was updated to 2.6.32-28.
- 19 Jan 2011
  - lin4neuro-amd64-20110119 was released.
- 18 Jan 2011: r0010
  - AFNI was updated to Version AFNI_2010_10_19_1028.
  - Caret was updated to v5.613.
- 17 Jan 2011: r0009
  - I found a bug that menu for the 3D Slicer was gone. I made a shortcut for the 3D Slicer again.
- 15 Jan 2011
  - lin4neuro-i386-20110114 was released. I found a bug that FSL and MINC do not run from the terminal. PATH was not for those software packages, so I set the PATH. Please note that MRIConvert still does not work fine with this system. Hopefully this will be fixed in the next release.
- 24 Dec 2010
  - lin4neuro-amd64-20101221 was released.
  - lin4neuro-i386-20101222 was also released. This is the first 32bit version of Lin4Neuro. However, MRIConvert does not work fine with this system. This will be fixed in the next release.
- 21 Dec 2010: r0008
  - user manual was added. It is under $HOME/manual.
  - Menu was modified.
  - MRIConvert was updated. (Revision 200, 13/Dec/2010)
  - The following packages in MINC-tools were added; mni-autoreg register display mincblob classify mincmorph inormalize
- 20 Dec 2010: r0007
  - Tutorials were updated with the help of Chris Rorden. Now tutorials can be found $HOME/tutorial.
- 18 Dec 2010: r0006
  - ITK was added. To install ITK, I added the repository provided by PaulNovo.org
- 16 Dec 2010: r0005
  - The following software packages were added; AMIDE, LIPSIA, 3D Slicer, and (x)Medcon
- 09 Nov 2010
  - Lin4Neuro-amd64-20101107 (r0004) was released.
- 07 Nov 2010: r0004
  - The following packages were removed in order to shrink the iso image. The reference for this was based on this page.
    
    ubuntu-desktop xscreensaver-gl xscreensaver-data rss-glx screensaver-default-images tomboy xcursor-themes myspell-en-za openoffice.org-l10n-en-gb openoffice.org-l10n-en-gb openoffice.org-l10n-en-za openoffice.org-thesaurus-en-au gnome-user-guide ubuntu-docs brltty ubufox apturl python-pyatspi at-spi mousetweaks gnome-mag bogofilter bogofileter-bdb ubuntu-sounds example-content evolution-exchange evolution-webcal splix min12xxw
- 06 Nov 2010: r0003
  - MRIcron was updated to the most recent version by courtesy of Chris Rorden. Icons were also provided for dcm2niigui and npm, both of which were updated.
  - Sample dataset and tutorial by Chris Rorden was added. It is now in /usr/local/tutorials/. Shortcut for the tutorials is found in the top left.
  - Virtual MRI system was added. The sample data for the Virtual MRI is in /usr/local/vmrt/brain_no_pathology.
- 16 Oct 2010: r0003
  - nautilus-image-converter was added. It provides options to rotate and resize images from the right-click menu.
  - nautilus-open-terminal was added. Now you have an option to open a terminal from the right-click menu.
- 15 Oct 2010: r0002
  - The menu was modified.
- 09 Oct 2010
  - Lin4Neuro-amd64-20100918 was released in Sourceforge
- 01 Oct 2010: r0001
  - Caret was added.
- 18 Sep 2010
  - The very fist version of Lin4Neuro (Lin4Neuro-amd64-20100918) was relased.